Attention: Genome Track Analyzer commandline version for Linux is available at request!
Here you can download some databases to compare your tracks with:
Homo sapiens hg19 build databases:
- Exons with strands
- - The descriptions of all chromosomes of the Homo sapiens reference genome set were downloaded from NCBI FTP site and then parsed to found coding regions (CDs).
- CpG Islands
- - Model Based CpG Islands
- Transcription Starts with strands
- - Eukaryotic Promoter Database hg19 EPDnew 003
- HEK293 H3K4me3 peaks
- - Histone mark H3K4Me3 ENCODE accession wgEncodeEH000953
- Random Dataset 1 in text and BED formats
- - Random dataset of non-matched points with the number of points approximately equal to that of exons.
- Random Dataset 2 in text and BED formats
- - Random dataset of non-matched points with the number of points approximately equal to that of exons.
Drosophila melanogaster databases:
- Exons with strands
- - Exons list of the D. melanogaster was made from Flybase FTP site GFF files that were parsed to find exons.
- Transcription Starts with strands
- - Eukaryotic Promoter Database dm EPDnew 002
- E(Z) PcG protein
- - Dataset built from E(Z) profile EMBL Array Express E-MEXP-535
- PC PcG protein
- - Dataset built from PC profile EMBL Array Express E-MEXP-535
- PSC PcG protein
- - Dataset built from PSC profile EMBL Array Express E-MEXP-535
- Histone methylation H3 ME3K27
- - Dataset built from ME3K27 profile EMBL Array Express E-MEXP-535
All profiles below were preliminary filtered by the threshold mean plus two standard deviations and clustered to mass centrum with distance 500 bp.